Cheap flights from San Juan Islands

Many airlines offer flexible change policies

Earn BONUS+ rewards on top of your airline points

Enjoy exclusive promotions on the ebookers app!

Cheap round-trip flights from San Juan Islands

The lowest prices found within the past 7 days from San Juan Islands to were for one-way flights and €158 for return flights, for the period specified. Prices and availability are subject to change. Additional terms apply.

Tue, 30 Jun - Tue, 7 Jul
SEA
Seattle - Tacoma Intl.
SAN
San Diego Intl.
€158 Return, found 3 days ago
€158
Return
found 3 days ago
Select Delta flight, departing Tue, 30 Jun from Seattle - Tacoma Intl. to San Diego Intl., returning Tue, 7 Jul, priced at €158 found 3 days ago
Thu, 28 May - Tue, 2 Jun
SEA
Seattle - Tacoma Intl.
SFO
San Francisco Intl.
€180 Return, found 6 days ago
€180
Return
found 6 days ago
Select Delta flight, departing Thu, 28 May from Seattle - Tacoma Intl. to San Francisco Intl., returning Tue, 2 Jun, priced at €180 found 6 days ago
Tue, 30 Jun - Tue, 7 Jul
SEA
Seattle - Tacoma Intl.
SAN
San Diego Intl.
€182 Return, found 3 days ago
€182
Return
found 3 days ago
Select Delta flight, departing Tue, 30 Jun from Seattle - Tacoma Intl. to San Diego Intl., returning Tue, 7 Jul, priced at €182 found 3 days ago
Tue, 2 Jun - Tue, 9 Jun
SEA
Seattle - Tacoma Intl.
DEN
Denver Intl.
€194 Return, found 6 days ago
€194
Return
found 6 days ago
Select Delta flight, departing Tue, 2 Jun from Seattle - Tacoma Intl. to Denver Intl., returning Tue, 9 Jun, priced at €194 found 6 days ago
Tue, 30 Jun - Tue, 7 Jul
SEA
Seattle - Tacoma Intl.
SAN
San Diego Intl.
€238 Return, found 3 days ago
€238
Return
found 3 days ago
Select United flight, departing Tue, 30 Jun from Seattle - Tacoma Intl. to San Diego Intl., returning Tue, 7 Jul, priced at €238 found 3 days ago
Tue, 30 Jun - Tue, 7 Jul
SEA
Seattle - Tacoma Intl.
CLD
McClellan-Palomar
€286 Return, found 3 days ago
€286
Return
found 3 days ago
Select United flight, departing Tue, 30 Jun from Seattle - Tacoma Intl. to McClellan-Palomar, returning Tue, 7 Jul, priced at €286 found 3 days ago
Sat, 13 Jun - Tue, 16 Jun
SEA
Seattle - Tacoma Intl.
SFO
San Francisco Intl.
€295 Return, found 3 days ago
€295
Return
found 3 days ago
Select American Airlines flight, departing Sat, 13 Jun from Seattle - Tacoma Intl. to San Francisco Intl., returning Tue, 16 Jun, priced at €295 found 3 days ago
Sat, 6 Jun - Wed, 10 Jun
PAE
Seattle Paine Field Intl. Airport
DEN
Denver Intl.
€355 Return, found 6 days ago
€355
Return
found 6 days ago
Select American Airlines flight, departing Sat, 6 Jun from Seattle Paine Field Intl. Airport to Denver Intl., returning Wed, 10 Jun, priced at €355 found 6 days ago
Thu, 28 May - Mon, 1 Jun
PAE
Seattle Paine Field Intl. Airport
SFO
San Francisco Intl.
€386 Return, found 3 days ago
€386
Return
found 3 days ago
Select Alaska Airlines flight, departing Thu, 28 May from Seattle Paine Field Intl. Airport to San Francisco Intl., returning Mon, 1 Jun, priced at €386 found 3 days ago
Fri, 26 Jun - Sat, 4 Jul
PAE
Seattle Paine Field Intl. Airport
SAN
San Diego Intl.
€455 Return, found 1 day ago
€455
Return
found 1 day ago
Select American Airlines flight, departing Fri, 26 Jun from Seattle Paine Field Intl. Airport to San Diego Intl., returning Sat, 4 Jul, priced at €455 found 1 day ago
Sun, 17 May - Tue, 19 May
SEA
Seattle - Tacoma Intl.
OGG
Kahului
€491 Return, found 3 days ago
€491
Return
found 3 days ago
Select United flight, departing Sun, 17 May from Seattle - Tacoma Intl. to Kahului, returning Tue, 19 May, priced at €491 found 3 days ago
Tue, 2 Jun - Tue, 9 Jun
PAE
Seattle Paine Field Intl. Airport
DEN
Denver Intl.
€549 Return, found 6 days ago
€549
Return
found 6 days ago
Select Alaska Airlines flight, departing Tue, 2 Jun from Seattle Paine Field Intl. Airport to Denver Intl., returning Tue, 9 Jun, priced at €549 found 6 days ago
San Juan Islands Flight Information
Origin airport IATA code
SEA
Return price
€490

Your cheap flight from San Juan Islands is available right now.

Visit us now at Ebookers to choose from lots of cheap flights leaving San Juan Islands or our last minute air tickets from San Juan Islands at unbeatable prices, specially chosen for those who want the best deal possible. Ebookers continuously compares and updates the choice of air tickets available from San Juan Islands, offered by more than 400 airlines worldwide. Ebookers works 24/7 to find the best deals so that our clients don’t have to waste their valuable time. Wherever you are going, you will find your perfect combination for a fantastic holiday at a budget price right here with our extensive flights database and helpful information; star ratings, reviews, maps and more… Many discount flights with a departure from San Juan Islands and last minute flights from San Juan Islands are available at Ebookers to help you organise your flights the way you want them at a price you can afford. Come and prepare your perfect holiday now at Ebookers.

Fancy a break from San Juan Islands? Book your flight in advance from San Juan Islands!

Thinking about getting away for a while and leaving from San Juan Islands? Visit Ebookers and discover our selection of inexpensive San Juan Islands flights and air tickets from San Juan Islands at unbelievable prices with a great choice of airlines - over 400 in fact. We give excellent service at an affordable price. For a great weekend away from San Juan Islands, visit to Ebookers where we have many available flights departing San Juan Islands on special offer. Check out our deals and find a flight leaving San Juan Islands at a price you never imagined. These special Ebookers offers aren’t just about cheap flights. We have over 95,000 hotels worldwide in our database, so why not stay in a San Juan Islands hotel and start or end your break in style? Combine your choice of flight, hotel and car rental from our vast, reliable database to create your perfect holiday or dream weekend at a discounted price with Ebookers. Don’t wait or you may be too late!

Featured Hotels near San Juan Islands

Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
During your stay at Inn to the Woods B&B, you'll be close to Reuben Tarte Memorial Park. Free breakfast, free WiFi in public areas and free self-parking are available. Some of the pet-friendly amenities that this property offers include food and water bowls, an off-lead area and pet-sitting services.
9.8/10 Exceptional! (95 reviews)
Didn't use the hot tub. The breakfast was just what I ordered and it was excellent.

Reviewed on 31 Mar 2026

Get rates
Opens in a new windowInn to the Woods B&B
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
The price is €300 per night from 18 May to 19 May
€300
per night
18 May - 19 May
Our customers tell us that they can't get enough of the helpful staff at Snug Harbor Resort. During your stay, you'll be close to English Camp. Features include free WiFi in public areas and free self-parking, plus a restaurant.
9.8/10 Exceptional! (511 reviews)
Beautiful clean rooms with great views! Our favorite stay of our trip, enjoyed a relaxing dinner and breakfast on the balcony. Highly recommend!

Reviewed on 14 May 2026

Opens in a new windowSnug Harbor Resort
The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
The price is €127 per night from 19 May to 20 May
€127
per night
19 May - 20 May
During your stay at The Orca Inn, you're just a quick walk from San Juan Islands Museum of Art. Features include free WiFi in public areas and free self-parking.
9/10 Wonderful! (2 reviews)
Love this place. Cheap, minimalist, effective. Ample parking. Walking distance to downtown. Old school charm.

Reviewed on 12 May 2026

Opens in a new windowThe Orca Inn
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
The price is €179 per night from 14 Jun to 15 Jun
€179
per night
14 Jun - 15 Jun
Our customers tell us that they can't get enough of the helpful staff at Earthbox Inn & Spa. During your stay, you're just a quick walk from San Juan Islands Museum of Art. Enjoy features like free WiFi in public areas and free self-parking, plus a full-service spa. Some of the pet-friendly amenities that this property offers include food and water bowls and an off-lead area.
8.8/10 Excellent! (1,000 reviews)
Great place to stay. Friendly staff. Excellent for pet-friendly. Love the products they use in the room and sell in the lobby. Beautiful, calming place! I will be going back again.

Reviewed on 12 May 2026

Opens in a new windowEarthbox Inn & Spa
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
The price is €169 per night from 17 May to 18 May
€169
per night
17 May - 18 May
Our customers tell us that they can't get enough of the helpful staff at Friday Harbor Suites. During your stay, you're just a quick walk from San Juan Historical Society and Museum. Free WiFi in public areas, free self-parking and a free ferry terminal shuttle are available.
8.6/10 Excellent! (1,001 reviews)
Awesome that our unit had a full kitchen with a fridge and stove and a few plates and cups

Reviewed on 12 May 2026

Opens in a new windowFriday Harbor Suites
Rosario Village

Rosario Village

2 out of 5
1400 Rosario Rd Eastsound WA
The price is €174 per night from 15 May to 16 May
€174
per night
15 May - 16 May
During your stay at Rosario Village, you're just a quick walk from Rosario Mansion Museum. Enjoy features like free WiFi in public areas and free self-parking, plus laundry facilities.
7.6/10 Good! (104 reviews)
Mother’s Day Weekend 2026: The Maison is CLOSED. The advertising online Expedia may have you thinking that the Rosario Maison is open but No it is not. The room we stayed in is in adjacent building on Rosario property. You have access to private beach area and private garden. The room has Roku, microwave, ...

Reviewed on 11 May 2026

Opens in a new windowRosario Village
Don't see what you're looking for?
See all available properties in San Juan Islands
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

More to explore for San Juan Islands

Flights from cities near San Juan Islands

Top flight origins

Flights from Other Cities

Most Popular Routes from null

Most Popular Routes from